Oligo Designer Toolsuite Cloud

This site provides comprehensive documentation for the Oligo Designer Toolsuite web application. The documentation is organized into two main sections:

For Users

The majority of this documentation is designed for users of the web application. Here you will find:

  • Getting Started guides for new users
  • Pipeline Documentation with detailed descriptions of each supported pipeline (MERFISH, SeqFISH, Scrinshot, OligoSeq, and Genomic Region Generator)
  • User Guides covering authentication, run management, and artifact handling
  • Usage Instructions explaining how to interact with the system and run oligo design experiments

Whether you are a new user looking to get started or a researcher aiming to understand the pipeline options, these guides will walk you through every major feature and usage scenario.

For Developers

The Development section contains technical documentation for developers working on the codebase. This section covers:

  • Development Setup including Docker configuration and IDE setup
  • Testing strategies and how to run tests
  • Monitoring infrastructure and observability
  • Error Handling implementation details
  • Caching mechanisms and optimization strategies
  • Architecture and technical implementation details

If you are a developer interested in extending the platform, contributing code, or understanding the technical implementation, refer to the Development section in the sidebar.

Tip: Use the sidebar to navigate sections.

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